PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G13190.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 222aa    MW: 25188.3 Da    PI: 4.7794
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G13190.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.56.8e-231195387
            NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                     ++d  lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++  
  OBART08G13190.3 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 95
                     67999**************************************************************************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-388140IPR009072Histone-fold
SuperFamilySSF471137.16E-3412140IPR009072Histone-fold
PfamPF008081.5E-191579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK FTGVEMTEEQ  120
AVAEQQRMFA EARARMNNGA AKPKEPEPEA QQQTQQLPQP QLHPQPQQPL QPQLQLHPQP  180
QQQPPQLQPQ PQLHQQPQLQ PQPPAELQSQ SQPQTEHGLD SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-331213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649020.0AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301300.0CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235094.11e-106nuclear transcription factor Y subunit beta
SwissprotP495922e-79NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0D3GZR91e-156A0A0D3GZR9_9ORYZ; Uncharacterized protein
STRINGBRADI3G34930.11e-106(Brachypodium distachyon)
STRINGOPUNC08G12020.11e-106(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.48e-81nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]