PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G13340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 253aa    MW: 26674.7 Da    PI: 6.1427
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G13340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.7e-24130184253
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYe 53 
                      dDg++WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+r+++d ++++++Y 
  OBART08G13340.1 130 DDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCTATKQVQRTDDDASLFDVVYV 184
                      8***************************98889*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.817124192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-24124185IPR003657WRKY domain
SuperFamilySSF1182905.36E-22128185IPR003657WRKY domain
SMARTSM007741.2E-31129188IPR003657WRKY domain
PfamPF031062.8E-23130184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGVVDGSGA QLVVAELVRV QGLLRQLEAH LSAPCSVELC RGLAAQIVAL TDRSIGIATR  60
SFSSASGGGA HFADTAPPMP ALTSCTPSPL SDGSDHQPFR TTNAKKRKTT ARWTSQVRVS  120
AAGGAEGPAD DGHSWRKYGQ KDILGAKHPR GYYRCTHRNT QGCTATKQVQ RTDDDASLFD  180
VVYVASDSYG LGGAGYGDWR CCDGDLQEVV SALATVTSAP DHAAMDAADF MSYCFDFDPA  240
VYGGIVGTPS FFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-19130188967OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116060.0AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence.
GenBankAY6769310.0AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds.
GenBankHQ8588350.0HQ858835.1 Oryza sativa Japonica Group isolate UT1345 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651040.11e-129probable WRKY transcription factor 54
TrEMBLA0A0D3GZT70.0A0A0D3GZT7_9ORYZ; Uncharacterized protein
STRINGOBART08G13340.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-23WRKY family protein