PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 233aa    MW: 26111 Da    PI: 4.4506
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.92.2e-051211591145
                      HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS
         Homeobox  11 qleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 
                      ++e+Le+++  +++p+ ++r++L  ++    +++ +q+k
  OBART08G15250.1 121 EVEALERVYTDCPKPTSARRQQLLCECpilaNIEPKQIK 159
                      689************************999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.940.108.3E-2648121IPR012293RNA polymerase subunit, RPB6/omega
SuperFamilySSF635623.4E-2253126IPR006110RNA polymerase, subunit omega/K/RPB6
PfamPF011921.1E-983121IPR006110RNA polymerase, subunit omega/K/RPB6
CDDcd000860.0034119159No hitNo description
Gene3DG3DSA:1.10.10.604.5E-4122159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAEDDYNDMD MGFASPPPSL ARFRRTRMSP QNLRLRKSYG LFTFSELEGA EEEPENNNED  60
AVDDVVGAED DREQEKTARP WKTSKYMTKY ERVRILGTRA LQISMNAPVM VELEGGTDPL  120
EVEALERVYT DCPKPTSARR QQLLCECPIL ANIEPKQIKF SLFSVTKTLV MAVLGTQVAA  180
HHNGHGMSHE NHTQESESSV EQHDPESQDD ISIKATPADE SPPEETSAAP TKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h0g_F5e-158313371121DNA-directed RNA polymerases I, II, and III subunit RPABC2
3h0g_R5e-158313371121DNA-directed RNA polymerases I, II, and III subunit RPABC2
5u0s_f5e-158313371121RNA polymerase II subunit Rpb6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218071e-102AK121807.1 Oryza sativa Japonica Group cDNA clone:J033097N04, full insert sequence.
GenBankAP0044631e-102AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03.
GenBankAP0149641e-102AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCT8338541e-102CT833854.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657672.11e-38PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like
TrEMBLA0A0D3H0F01e-174A0A0D3H0F0_9ORYZ; Uncharacterized protein
STRINGOBART08G15250.11e-174(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2375144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.12e-16HD-ZIP family protein