PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15610.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22478.4 Da    PI: 8.4594
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.2e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     kri+n + rqvtfskRrng++KKA ELS+LCdaev +++fsstg+ly+++s
  OBART08G15610.1  9 KRIDNATSRQVTFSKRRNGLFKKARELSILCDAEVGLLVFSSTGRLYDFAS 59
                     79***********************************************86 PP
2K-box77.24.3e-2681160988
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                      +++++a+ +qqe+a L+++++nLq+ +R+llG++L+ L++++Lq+Le++Le slk+iR +K++++++qi+el +k  +++
  OBART08G15610.1  81 NASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVYKTK 160
                      6788999******************************************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-42160IPR002100Transcription factor, MADS-box
CDDcd002653.48E-46278No hitNo description
SuperFamilySSF554552.88E-33290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.7E-2383158IPR002487Transcription factor, K-box
PROSITE profilePS5129713.11486193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRNGLFK KARELSILCD AEVGLLVFSS TGRLYDFASS  60
SMKSIIERYN ETKEDPHQTM NASSEAKLWQ QEAASLRQQL HNLQEYHRQL LGQQLSGLDV  120
EDLQNLESKL EMSLKNIRLR KDNVMMDQIQ ELSRKVYKTK SNGHPTGSTI QHSFLITDNE  180
IGPNLELSLP ENVEKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22179178MEF2C
5f28_B1e-22179178MEF2C
5f28_C1e-22179178MEF2C
5f28_D1e-22179178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3452200.0AY345220.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883353.11e-136MADS-box transcription factor 23 isoform X2
SwissprotQ6VAM41e-111MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A0D3H0I71e-142A0A0D3H0I7_9ORYZ; Uncharacterized protein
STRINGOBART08G15610.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-73AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]