PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 200aa    MW: 21425.6 Da    PI: 4.8998
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.11.9e-312813910122
              TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaakskksq 101
                      ki T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt  +s +a ++            ++++++a+++aa s  ++
  OBART08G15630.1  28 KIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAAAASAAKE 118
                      99****************************************************9955555333221...111111222223334444555555 PP

              TCP 102 ksaasalnlakesrakarara 122
                      k +as ++  + s+a+ar r 
  OBART08G15630.1 119 KGEASSSSTTNASSARARNRG 139
                      555555666667777777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.5762280IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-2828131IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADVKIR TAQGVRDRRM RLSVGVARDF FALQDKLGFD  60
KASRTVEWLL TQSKHAIDRL TLPDSADAAA APAFAAAPPP ADQHSSAMAA AAASAAKEKG  120
EASSSSTTNA SSARARNRGH DGSLPVAPMD ERGRRGVELD WTAAAAASTE QPMDGLEYYF  180
QYYNHLEEIM SCDPTTTTDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038680.0AP003868.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1111_B08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-118transcription factor TB1
TrEMBLA0A0D3H0J31e-142A0A0D3H0J3_9ORYZ; Uncharacterized protein
STRINGOBART08G15630.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-19TCP family protein