PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G15650.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 320aa MW: 33041.6 Da PI: 5.8564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G15650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46	9.2e-15	130	176	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L +++e++k+L OBART08G15650.1 130 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 176 78***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.066	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	130	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-14	130	179	No hit	No description
Pfam	PF00010	3.6E-12	130	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-15	131	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-14	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MWEAVGGGDG TALLPWPGSA AAATTSGAAA PLYMPPAAAA AAPFSAGEQL PVEQPFYFDG 60 GGGVAGHNHH PHHHQYGMEA PPPMTMTQMG GGGSSSSRMV VSGLLGTLQA ELGRMTAKEI 120 MDAKALAASR SHSEAERRRR QRINGHLARL RSLLPNTTKT DKASLLAEVI EHVKELKRQT 180 SAMMEDGAAG GEAAAAPVVL LPTEDDELEV DAAADEGGRP AAPRSPRSAA AVLLIAAVEE 240 EDPDEAGNDD DGEHGYGVAA SHRRHELVAS IHEALRGVMN RKAASSDTSS SGAGGGGGSI 300 KRQRMISAHD QQGSFNSSGW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109616	0.0	AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648851.1	1e-154	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-35	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D3H0J5	0.0	A0A0D3H0J5_9ORYZ; Uncharacterized protein
STRING	OBART08G15650.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-25	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]