PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G15940.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 129aa MW: 13066 Da PI: 8.7814

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G15940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.6	7e-34	36	92	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e OBART08G15940.1 36 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 92 679*************************99999*****************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-21	7	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.9E-29	38	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.418	39	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.3E-31	39	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE 60 FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPQPPQPQQ 120 HLPRTAAIP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648556.1	3e-81	zinc-finger homeodomain protein 10 isoform X1
Refseq	XP_025875847.1	3e-81	zinc-finger homeodomain protein 10 isoform X2
Swissprot	Q6Z528	2e-82	ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBL	A0A0D3H0N3	4e-83	A0A0D3H0N3_9ORYZ; Uncharacterized protein
TrEMBL	I1QIZ1	2e-81	I1QIZ1_ORYGL; Uncharacterized protein
STRING	ORGLA08G0139200.1	3e-82	(Oryza glaberrima)
STRING	OBART08G15940.1	6e-84	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	4e-21	zinc finger homeodomain 1