PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G17900.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 222aa    MW: 23988.4 Da    PI: 4.7384
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G17900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-1687129955
              AP2   9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+ +++g
  OBART08G17900.1  87 RP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 129
                      56.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.79879137IPR001471AP2/ERF domain
PRINTSPR003678.9E-68192IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1984138IPR016177DNA-binding domain
SMARTSM003801.6E-2884143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2684137IPR001471AP2/ERF domain
CDDcd000182.57E-2587137No hitNo description
PfamPF008472.1E-987129IPR001471AP2/ERF domain
PRINTSPR003678.9E-6103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTNRISAMGG NQEYMIRFDG HIDDASPSSA TAEPPPPLPP PRPFAGRAIS AEREHSVIVA  60
TLLHVISGYR TPPPEVFPAA RAEVCGRPWG KWAAEIRDPR RAVRKWLGTF DTAEEAARAY  120
DRAAVEFRGP RAKLNFPFPE QLSAHDDSNG DASAAAKSDT LSPSPRSADA DEQVEHTRWP  180
QGGGGGGGGG ETGDQLWEGL QDLMQLDEGG LSWFPQSSDS WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1684138964ATERF1
3gcc_A3e-1684138964ATERF1
5wx9_A3e-16871442179Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0628820.0AK062882.1 Oryza sativa Japonica Group cDNA clone:001-108-D06, full insert sequence.
GenBankAP0043990.0AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.14e-91ethylene-responsive transcription factor ERF109
TrEMBLA0A0D3H1B01e-159A0A0D3H1B0_9ORYZ; Uncharacterized protein
STRINGOBART08G17900.11e-160(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-17redox responsive transcription factor 1