PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G18480.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 220aa MW: 23895 Da PI: 7.0239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G18480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.2e-13	2	49	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++Y+k++ OBART08G18480.1 2 THIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 49 8************************...9***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.92E-12	1	54	No hit	No description
PROSITE profile	PS50888	14.691	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-15	1	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-13	2	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-10	2	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	4	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MTHIAVERNR RKQMNEYLAV LRSLMPASYV QRGDQASIIG GAINYVKEME QLLQSLEAHR 60 HARRARTDAA AALPFAGFFT FPQYSMSAVP TTTTTTVAAA ATENGNAVAG DDADADASGS 120 KPSSVADIEV TMVESHANLK VLSRRRPRQL LRMVGGLQHH RLAVLHLNVA SAGHMALYSL 180 SLKVEDDCQL TSVDDIAAAV HGIVETIEQE QQQQQKQSCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107626	0.0	AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649413.1	1e-109	transcription factor bHLH96
Swissprot	Q9C7T4	2e-66	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0D3H1H4	1e-161	A0A0D3H1H4_9ORYZ; Uncharacterized protein
TrEMBL	I1QJK3	1e-159	I1QJK3_ORYGL; Uncharacterized protein
STRING	ORGLA08G0160400.1	1e-160	(Oryza glaberrima)
STRING	OBART08G18480.1	1e-162	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	8e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]