PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G18610.5
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 522aa    MW: 57449.4 Da    PI: 7.4189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G18610.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001202224123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  Hi +H
  OBART08G18610.5 202 FECPVCNKTFEEQSRYFGHIGSH 224
                      89*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.69327100IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.24E-63182IPR016177DNA-binding domain
PfamPF014294.9E-53780IPR001739Methyl-CpG DNA binding
SuperFamilySSF576679.3E-5152224No hitNo description
SMARTSM003550.41153176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681202229IPR007087Zinc finger, C2H2
SMARTSM003550.018202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MTTEEELMGF ISSLAGQWVN QRMRRKLVDA SFFGDHLPSG WRLQLGIERK DRKAWVNCFS  60
YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT  120
SMDSQSNLPV ASATFYSHSR DQDETVADDI NSYECQQCNL TFHGQSAYAH HLITFHKVSS  180
KRRKSNKVSK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH IGSHAKYQGL TPEAFLQTFS  240
GKVGLSSSLQ VLVGSPQLNE KTTACEARSQ HHDCSTKHGG NSTRGIDLFN SNHRANFNGH  300
NQSWCRSDEI PPTTEAQSTW TYRNNEMNCA DRTVPRTVPQ PNDHEDCRVS GFAEATNFND  360
QAGRHQGFRP FSFGTTNHCQ GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT  420
ANNETSTALN DVNRSCITGK GFSGSFSNND GAASIVLPSS GLNNKISSSL GVADRSSIAA  480
RSFNAGYVYE NGASEANNIG NKNNTMVYQT SLAMRPLSPP FF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064320.0AK106432.1 Oryza sativa Japonica Group cDNA clone:002-103-C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650344.10.0uncharacterized protein LOC4345879 isoform X3
TrEMBLA0A0D3H1J20.0A0A0D3H1J2_9ORYZ; Uncharacterized protein
STRINGOS08T0485600-010.0(Oryza sativa)