PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G18720.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 232aa    MW: 25120 Da    PI: 7.4348
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G18720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.32.9e-12122182363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e +r rr+ +NRe+ArrsR RK+ ++ eL   v+ L + N++L +el++    +a ++ e+
  OBART08G18720.1 122 EERRRRRMVSNRESARRSRMRKQRQLSELWAQVEHLRGANRRLLDELNRALRGCADVRREN 182
                      67899*******************************************9888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-12120184IPR004827Basic-leucine zipper domain
PfamPF001701.6E-9121180IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.772122185IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-9124196No hitNo description
SuperFamilySSF579591.41E-10124172No hitNo description
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
CDDcd147021.50E-14129173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYHHHHGGHG EVASLHLLSP PNPPFFGAAE HHHHHHHGLI NMALPPQAYF VPAAPPPPPP  60
FQEATAALAA GDDATAALAV FELERILEEA AAAGGGGGNG SPSSGSDGCC YGLQGVAPAA  120
EEERRRRRMV SNRESARRSR MRKQRQLSEL WAQVEHLRGA NRRLLDELNR ALRGCADVRR  180
ENSRLRDEKA ELAGKLQLLL PRQPAPEKNA ADDQSSCSSE PCKNSTTTTT AE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136143RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043760.0AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBankAP0045570.0AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649077.11e-116bZIP transcription factor RISBZ3-like
TrEMBLA0A0D3H1K21e-167A0A0D3H1K2_9ORYZ; Uncharacterized protein
TrEMBLI1QJM81e-167I1QJM8_ORYGL; Uncharacterized protein
STRINGORGLA08G0162900.11e-168(Oryza glaberrima)
STRINGOBART08G18720.11e-168(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-10basic leucine-zipper 43