PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G19860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 99aa    MW: 11319.1 Da    PI: 10.227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G19860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-143075655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OBART08G19860.1 30 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 75
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2812474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-172784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-112879No hitNo description
Gene3DG3DSA:4.10.280.102.3E-162987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-113075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-133080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMDKQTNT  60
ADMLDLAVDY IKDLQKQVKG LNDSRANCTC SAKHQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4658241e-165AF465824.1 Oryza sativa transcription factor RAU1 (rau1) mRNA, partial cds.
GenBankAK1001061e-165AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.17e-65transcription factor bHLH130
SwissprotQ66GR33e-50BH130_ARATH; Transcription factor bHLH130
TrEMBLQ8S4905e-68Q8S490_ORYSA; Transcription factor RAU1 (Fragment)
STRINGOGLUM08G21000.28e-65(Oryza glumipatula)
STRINGOPUNC08G18020.22e-66(Oryza punctata)
STRINGORGLA08G0174800.18e-65(Oryza glaberrima)
STRINGOBART08G19860.12e-68(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]