PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G20010.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 291aa MW: 30771.9 Da PI: 8.7674

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G20010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	91.2	1.1e-28	1	53	26	78
HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 26 vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +hskap v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrr++q+ OBART08G20010.1 1 MHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQT 53 6*************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03110	2.1E-20	1	50	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	23.35	1	51	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.1E-18	1	38	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-26	1	54	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MHSKAPRVVV AGLEQRFCQQ CSRFHLLPEF DQGKRSCRRR LAGHNERRRR PQTPLASRYG 60 RLAASVGEEH RRFRSFTLDF SYPRVPSSVR NAWPAIQPGD RISGGIQWHG NLAPHGHSSA 120 VAGYGANTYS GQGSSSSGPP VFAGPNLPPG GCLAGVGAAT DSSCALSLLS TQPWDTTTHS 180 AAASHNQAAT MSTTTSFDGN PVAPSAMAGS YMAPSPWTGS RGHEGGGRSV AHQLPHEVSL 240 DEVHPGPSHH AHFSGELELA LQGNGPAPAP RIDPGSGSTF DQTSNTMDWS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-20	1	50	35	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107191	0.0	AK107191.1 Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650813.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q7EXZ2	0.0	SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBL	A0A0D3H205	0.0	A0A0D3H205_9ORYZ; Uncharacterized protein
TrEMBL	I1QK14	0.0	I1QK14_ORYGL; Uncharacterized protein
STRING	ORGLA08G0176500.1	0.0	(Oryza glaberrima)
STRING	OBART08G20010.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-29	squamosa promoter binding protein-like 9

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Miura K, et al. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat. Genet., 2010. 42(6): p. 545-9 [PMID:20495564] Jiao Y, et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat. Genet., 2010. 42(6): p. 541-4 [PMID:20495565] Springer N Shaping a better rice plant. Nat. Genet., 2010. 42(6): p. 475-6 [PMID:20502488] Wang Y,Li J Branching in rice. Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9 [PMID:21144796] Wang J,Kong L,Gao G,Luo J A brief introduction to web-based genome browsers. Brief. Bioinformatics, 2013. 14(2): p. 131-43 [PMID:22764121] Luo L,Li W,Miura K,Ashikari M,Kyozuka J Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways. Plant Cell Physiol., 2012. 53(10): p. 1793-801 [PMID:22960246] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853] Cruz-Garcia GS,Struik PC Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1. Econ. Bot., 2015. 69(2): p. 99-113 [PMID:26160981] Srikanth B, et al. Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions. Gene, 2016. 576(1 Pt 3): p. 441-50 [PMID:26519999] Perignon M, et al. Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial. Nutrients, 2016. [PMID:26751473] Kim SR, et al. Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. Rice (N Y), 2016. 9(1): p. 12 [PMID:26987543]