PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G20090.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 460aa    MW: 47607.5 Da    PI: 10.7234
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G20090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-102962337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     +W t Ed+ll++av ++G+ +W+++a++m+  R++
  OBART08G20090.1 29 SWGTSEDLLLACAVSRHGTASWDAVAKEMQ-SRCP 62
                     6*****************************.9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.1E-62682IPR001005SANT/Myb domain
SuperFamilySSF466893.43E-62682IPR009057Homeodomain-like
PfamPF002491.8E-92962IPR001005SANT/Myb domain
CDDcd001677.66E-72979No hitNo description
PROSITE profilePS500906.4352980IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-62993IPR009057Homeodomain-like
SMARTSM002970.001597208IPR001487Bromodomain
CDDcd043696.81E-9125203No hitNo description
PfamPF004391.5E-6129192IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.0E-11129224IPR001487Bromodomain
SuperFamilySSF473707.33E-12130205IPR001487Bromodomain
PROSITE profilePS500148.745131189IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTARSGDPGV SPESSSAAAA AAGSGAGRSW GTSEDLLLAC AVSRHGTASW DAVAKEMQSR  60
CPSAAVFTPT TCRLRFRVLH RRFSGGVTAE NEDADGGEEE EEPDAAAVAG WVEELRELRV  120
AELRREDGER YSGTIRRHVD LETVRSRLVG ATAAAAAAAC YASASEFYRD MMLLCANALV  180
FFPRGSPEHA AALQLRALVS KQVSKDRQPH AGAKAPAAAA AEEKKKPAKA DADIAGPLLE  240
KAPIIVCRKR SSIAKAAAAA AKGEKAEKAE TDKKEKDGSE EKKKAAAAAT TATAAATAKD  300
KKARGMRTNK SRGPARNQKT AKLSETGEGT KKSDKKGGGG GGSSSAAAAA GGVAKKRNAV  360
DFLNRMNQNG SPSTERVSLL ETLKLSAAAT EQQKKSSSSS SGKGDGRKEA GGSGSKKGAA  420
ASTPPGRRIG RPPKRAAAPP TPPPSKRAKD DKPTRKRGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650505.11e-129uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1
TrEMBLA0A0D3H2140.0A0A0D3H214_9ORYZ; Uncharacterized protein
STRINGOBART08G20090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-14DNA-binding bromodomain-containing protein