PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G20460.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 174aa    MW: 19376.8 Da    PI: 4.9646
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G20460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16.2e-38201191100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  OBART08G20460.1  20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 113
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  OBART08G20460.1 114 ARTQAH 119
                      *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.19819120IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-3820117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQDPEEDDDD QQQQHPAARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN  60
VARLLQSLPM AERGNAANTM AMEAYWRVQD PVYGCTGIIN RLQEEIRAVQ CELARTQAHL  120
AIGVASSQQP PPPPPPPPLP SPPPPPQQQQ QQQEEQSPPP LLDPADEFLN LDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-292112012111LOB family transfactor Ramosa2.1
5ly0_B2e-292112012111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-171CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660281.18e-67PREDICTED: LOB domain-containing protein 24-like
SwissprotP594683e-38LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0D3H2531e-121A0A0D3H253_9ORYZ; Uncharacterized protein
STRINGOBART08G20460.11e-122(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-31LOB domain-containing protein 24