PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G21560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 19410.4 Da    PI: 9.593
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G21560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.6e-271766251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  OBART08G21560.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                     8***********************************************86 PP
2K-box15.19.9e-071311574369
            K-box  43 LesLslkeLqqLeqqLekslkkiRskK 69 
                      +++L++ eL+ Le+++ ++l+ +++k 
  OBART08G21560.1 131 VNELNIAELRGLEEAMTNALTVVKNKL 157
                      799********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-35867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291868IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-281030IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-291092IPR002100Transcription factor, MADS-box
CDDcd002651.32E-321378No hitNo description
PfamPF003192.6E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283045IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-284566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRLRQK EHSDDPVPKI NHITQCCLIV  120
QVIISVLESN VNELNIAELR GLEEAMTNAL TVVKNKLMMK VASVLPQSEV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-171078369Myocyte-specific enhancer factor 2B
1tqe_Q2e-171078369Myocyte-specific enhancer factor 2B
1tqe_R2e-171078369Myocyte-specific enhancer factor 2B
1tqe_S2e-171078369Myocyte-specific enhancer factor 2B
6c9l_A2e-171078369Myocyte-specific enhancer factor 2B
6c9l_B2e-171078369Myocyte-specific enhancer factor 2B
6c9l_C2e-171078369Myocyte-specific enhancer factor 2B
6c9l_D2e-171078369Myocyte-specific enhancer factor 2B
6c9l_E2e-171078369Myocyte-specific enhancer factor 2B
6c9l_F2e-171078369Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRKRGKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429801e-160AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649437.11e-108MADS-box transcription factor 51-like isoform X1
TrEMBLA0A0D3H2I41e-122A0A0D3H2I4_9ORYZ; Uncharacterized protein
STRINGOBART08G21560.11e-123(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-25MIKC_MADS family protein