PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G21800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 217aa    MW: 23307.5 Da    PI: 9.3876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G21800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.54.9e-27191401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkev 92 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk+v
  OBART08G21800.1  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPHAA-RGRRQQVTASGGCWKpAGGRDKPV 108
                      79****************************.8899998***********43..456789*****99875.68899999999****666789**9 PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++   +++lvg+kk +         g    Wvmhey+l
  OBART08G21800.1 109 VVArcgGSHLVGVKKGMEGT------G-GGCWVMHEYSL 140
                      99777777778888887543......2.458******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3814164IPR003441NAC domain
PROSITE profilePS5100535.98119164IPR003441NAC domain
PfamPF023655.4E-1820140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MERAAAAAPV VMRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PHAARGRRQQ VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMEGTGG GCWVMHEYSL ALPMHKKGCL AEAEEWVVCR IFQRSSSGSR SPRRPDNDVR  180
RTMPAVAELG RSPSPSSSSS QSSCVTSSSD QEEVSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-281917017171NO APICAL MERISTEM PROTEIN
1ut4_B7e-281917017171NO APICAL MERISTEM PROTEIN
1ut7_A7e-281917017171NO APICAL MERISTEM PROTEIN
1ut7_B7e-281917017171NO APICAL MERISTEM PROTEIN
3swm_A7e-281917020174NAC domain-containing protein 19
3swm_B7e-281917020174NAC domain-containing protein 19
3swm_C7e-281917020174NAC domain-containing protein 19
3swm_D7e-281917020174NAC domain-containing protein 19
3swp_A7e-281917020174NAC domain-containing protein 19
3swp_B7e-281917020174NAC domain-containing protein 19
3swp_C7e-281917020174NAC domain-containing protein 19
3swp_D7e-281917020174NAC domain-containing protein 19
4dul_A7e-281917017171NAC domain-containing protein 19
4dul_B7e-281917017171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0679060.0AK067906.1 Oryza sativa Japonica Group cDNA clone:J013126H02, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-116NAC domain-containing protein 18
TrEMBLA0A0D3H2L11e-157A0A0D3H2L1_9ORYZ; Uncharacterized protein
STRINGOBART08G21800.11e-157(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.16e-31NAC domain containing protein 41