PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G21800.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 153aa    MW: 16202.2 Da    PI: 9.5008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G21800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.64.2e-0967654128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk+v+++   +++lvg+kk ++        g    Wvmhey+l
  OBART08G21800.2   6 SDGDKYFFAVRPHAA-RGRRQQVTASGGCWKpAGGRDKPVVVArcgGSHLVGVKKGMAAA------G-GGCWVMHEYSL 76 
                      45678****999875.78899999999****666789**999777777889999888654......2.468******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.3461100IPR003441NAC domain
SuperFamilySSF1019418.37E-165100IPR003441NAC domain
PfamPF023651.8E-51076IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQCASSDGDK YFFAVRPHAA RGRRQQVTAS GGCWKPAGGR DKPVVVARCG GSHLVGVKKG  60
MAAAGGGCWV MHEYSLALPM HKKGCLAEAE EWVVCRIFQR SSSGSRSPRR PDNDVRRTMP  120
AVAELGRSPS PSSSSSQSSC VTSSSDQEEV SSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615431e-155AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0687761e-155AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047661e-155AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankCT8293311e-155CT829331.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110N11, full insert sequence.
GenBankCT8293321e-155CT829332.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114M05, full insert sequence.
GenBankEU8469971e-155EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-68NAC domain-containing protein 18
TrEMBLA0A0D3H2L21e-106A0A0D3H2L2_9ORYZ; Uncharacterized protein
STRINGOBART08G21800.11e-101(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-07NAC family protein