PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G22550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 414aa    MW: 44583.8 Da    PI: 6.8686
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G22550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-351312222102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll+
  OBART08G22550.1 131 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 215
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  OBART08G22550.1 216 EIHRRKV 222
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-38123215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-59127220IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-35128220IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-32131220IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-20131154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-20169181IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340170194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-20182194IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADQTAAAVV VVGGAAATMG EPSPPPPAPA AEAAGVGVGQ QQRTVPTPFL TKTRLPVRTF  60
VSHAKTAFLP ASGSYYYYGR SSPDQIRPPP RRMAEQGAGE ADAGGGEPPP AAVMTAAAEA  120
LAGQRSLPTP FLTKTYQLVE DPAVDDVISW NEDGSTFVVW RPAEFARDLL PKYFKHNNFS  180
SFVRQLNTYG FRKIVPDRWE FANDCFRRGE RRLLCEIHRR KVTPPAPAAT TAGDENERLR  240
RENAQLAREL SQMRKLCNNI LLLMSKYAST QQLDAANASS AAGNNNNNNC SGESAEAATP  300
LPLPAVLDLM PSCPGAASAA APVSDNEEGM MSAKLFGVSI GRKRMRHDGG GDDDHAATVK  360
AEPMDGRPHG KDEHSAETQA WPIYRPRPVY QPIRACNGYE YDRAGSDQDG SNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2612122311122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1017000.0AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBankAP0041630.0AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06.
GenBankAP0047040.0AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCU4063540.0CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBankCU4068840.0CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875859.10.0heat stress transcription factor B-2b isoform X2
SwissprotQ6Z9C80.0HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0D3H2V10.0A0A0D3H2V1_9ORYZ; Uncharacterized protein
STRINGOBART08G22550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-63heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]