PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART09G04700.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 71aa MW: 7789.9 Da PI: 8.3884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G04700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	7e-07	47	69	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ a G+Ck+G +Ck+ Hg OBART09G04700.1 47 RACPELATKGWCKFGLNCKYCHG 69 78******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.2E-6	11	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.08	12	30	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.12E-6	41	68	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.911	43	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	47	69	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGVANHKSVL TWREERCHNG AACRYAHGEE DQRIVPEMRV GGGGTVRACP ELATKGWCKF 60 GLNCKYCHGG V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005912	3e-92	AP005912.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.
GenBank	AP014965	3e-92	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646504.1	2e-29	zinc finger CCCH domain-containing protein 47
Swissprot	Q8GW05	2e-30	C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBL	A0A0D3H4Y7	2e-45	A0A0D3H4Y7_9ORYZ; Uncharacterized protein
STRING	OBART09G04700.1	4e-46	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16637	11	12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]