PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART09G07580.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 234aa MW: 24525.1 Da PI: 4.123

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G07580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	32.5	2.5e-10	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m++l++eA+ara+dPv Ga++v+ +l +q+e l+aela+++++ OBART09G07580.1 1 MQALTFEANARASDPVGGAARVVVELCRQYEMLHAELAAVQHH 43 899*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.0E-6	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MQALTFEANA RASDPVGGAA RVVVELCRQY EMLHAELAAV QHHLKLCRQQ HAAAAAAAAN 60 DPLVANVDPL ADTAAEMLFA GAVVPNQNDD AMVDAFYADQ QTAGDGDQEQ YLVKDEALAA 120 QPPPQQPYEY LNYGTAGDEG SSHAWYTGNG GDADASPPMG LSDQLQQCQI GAAPPFDVKP 180 ELPATMEHGG SVFVEQPEQK ILPAAGSSSS AAAHCQLELG CSSNAWKVGT HVIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071233	0.0	AK071233.1 Oryza sativa Japonica Group cDNA clone:J023082A13, full insert sequence.
GenBank	AP005675	0.0	AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	1e-169	protein IAL1
TrEMBL	A0A0D3H605	1e-170	A0A0D3H605_9ORYZ; Uncharacterized protein
TrEMBL	I1QNC1	1e-169	I1QNC1_ORYGL; Uncharacterized protein
STRING	ORGLA09G0055000.1	1e-169	(Oryza glaberrima)
STRING	OBART09G07580.1	1e-171	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10