PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G07640.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 1391aa    MW: 156501 Da    PI: 5.9493
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G07640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.7e-1739128170
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....................rergferspkqCkekwenlnkrykkikegekk 70 
                      rW++qe++aLi++r+em++++r +  k++lWe++s+                      +  g++rs+k+Ckek+e+++k y+ +k     
  OBART09G07640.1  39 RWSRQETQALIKIRSEMDDAFRGATIKGNLWEDISREQskkafcdvvcvqysqsakalAGLGYRRSAKRCKEKFEKVHKIYEHTKSAGAP 128
                      8************************************99*******************************************99976555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-1038132No hitNo description
CDDcd122035.34E-1938123No hitNo description
SuperFamilySSF525401.73E-48515798IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.6E-7548682IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.2E-44554824IPR002182NB-ARC
PRINTSPR003641.4E-10559574No hitNo description
PRINTSPR003641.4E-10634648No hitNo description
PRINTSPR003641.4E-10734748No hitNo description
SuperFamilySSF520587.6E-328661106IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.6E-168771106IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.9E-1511741384IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.6E-3211831378IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.4E-1012431259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1391 aa     Download sequence    Send to blast
MDDKNQEGEP VPTTKPQERL SNKEEYATST EAGGGGSSRW SRQETQALIK IRSEMDDAFR  60
GATIKGNLWE DISREQSKKA FCDVVCVQYS QSAKALAGLG YRRSAKRCKE KFEKVHKIYE  120
HTKSAGAPRQ ESLKAPVVSS GCPVVAPSPS MASGAVELHH SQPMNLDNTS SFLPMSESAE  180
LESSKGCEED MMMITGEIGS KSNRSSGGGK ELAALFDGFM KQVVERQEEM QRRFLEALEK  240
REAERRAREE AERAAREEAW RRQEMARLNR EHEQQRAQDH AAIIAFLHRI GQPPPGVIST  300
AAAQPFPWPL QQELAHAPPF QQQPKHKETA QQDDAWASLS LHPSKSLTDE PSVLNYATPG  360
TVESTTSTST QHPIATPDSA QNTHDPTTFQ HSPSFDERFV LETTLRGMYE LIKLAECWVH  420
KDYSIANLLQ EAKDTVYCAE DLLDELNYYE LQDGVGFNAN RSSCPEFSDI RMTEIHGKLN  480
SLKEQMGHLG LHDMQPQHFI FESVSQKYGN LMYDRTNFGY QEELQVLIDS LILDKNSPTS  540
GQVAEVPSSG RAGQKNLSVL TIVGDGGIGK TALAHCSFND QKVQDHFDLL VWICVSDGFD  600
DKKLIKRLAW AIAESEMKSD DLICLQRVLT NGMIHHSRRL LLVLDDLQED VCQEYYLGWE  660
SFLAPLKCAS PGSMVLVTTR SMKVAEHISS VCLQLAGLPE EINWHLFSMH AFDLPISDSD  720
QEVECIGRKI AARLNGSPLG AKIVGCLLKL KLDAVYWKSI LESELWELAH HKETRIWPAL  780
HLSYQYLPFH LKRCFSFCSM YPKSHEFDAE TLVDSWVAVG LVVSNGIVPA VDIGHEYFDQ  840
LVRRSFFQIS PTSSSSRHAY VMQGLLYETA QKISTNECFV IKDSSDLLRI PPKVRHVSIL  900
HFSGLSSSDL ESLHKYKTLR SVVCISIDSD VITTSVLETW SCHLTNIRML RFISCRLKEL  960
LGNVGNLILL RYLDISSCDF EALPDSFWRL RNLEILDAQN CRFDDVPKDI VKLVKLRKVR  1020
LRSDLNNQLG HVPGVGNLIY LQDMPYYAVD DTPGRGIHEL KNLNNLRGAL EISGLHNVTS  1080
KEQAVEADLD KKTHLNTLTL SWHDSIRPDK HNGEQEMEVL EGLRPNPSIK NLEIRFYMGS  1140
GFHPRWLLID GQDFSSYPFD SNDFSILDFN DFSSYLFDFK TSSRLESLSI SSCPNIANLF  1200
ITETGSSSSS SRGSSPVVFR SLTKLSITWC RKLMSLDNLL LPELLPEIKV IRISNCEELA  1260
SLPTNQLIKF THLEDLEVSH CWSLSWEQGL TLPRSLKSLK LEACGELTDS VLRCGLRELP  1320
VLVSLELQFC SGVECIGAEI WSGLPSLQRL KIFCCQELSS IGGGESIARV ESIDIRHCPK  1380
LRELEQPFQR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C8e-37401114734758Disease resistance RPP13-like protein 4
6j5t_F8e-37401114734758Disease resistance RPP13-like protein 4
6j5t_G8e-37401114734758Disease resistance RPP13-like protein 4
6j5t_L8e-37401114734758Disease resistance RPP13-like protein 4
6j5t_O8e-37401114734758Disease resistance RPP13-like protein 4
6j5u_A8e-37401114734758Disease resistance RPP13-like protein 4
6j5v_A8e-37401114734758Disease resistance RPP13-like protein 4
6j5w_A8e-37401114734758Disease resistance RPP13-like protein 4
6j6i_C8e-37401114734758Disease resistance RPP13-like protein 4
6j6i_F8e-37401114734758Disease resistance RPP13-like protein 4
6j6i_G8e-37401114734758Disease resistance RPP13-like protein 4
6j6i_L8e-37401114734758Disease resistance RPP13-like protein 4
6j6i_O8e-37401114734758Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054220.0AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612015.10.0putative disease resistance protein RGA3
TrEMBLA0A0D3H6110.0A0A0D3H611_9ORYZ; Uncharacterized protein
STRINGOBART09G07640.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1409969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-16Trihelix family protein