PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G07660.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 1307aa    MW: 148051 Da    PI: 6.437
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G07660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.7e-1847114173
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                      rW++qe+laL+++r+em+ ++r++    +lWee+s+k+++ g+ rs+++Ckek e++ +ryk+ k+g  ++++
  OBART09G07660.1  47 RWPRQETLALLQIRSEMDGSFRDA----TLWEEISSKLSDMGYVRSAQMCKEKYEEV-QRYKRSKDGCAGKQD 114
                      8*********************98....9**************************98.58*****99887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.98E-2146106No hitNo description
PfamPF138374.1E-1146113No hitNo description
PROSITE profilePS500906.6947100IPR017877Myb-like domain
SuperFamilySSF525404.6E-52433736IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.2E-4490617IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.3E-45492761IPR002182NB-ARC
PRINTSPR003641.2E-10496511No hitNo description
PRINTSPR003641.2E-10571585No hitNo description
PRINTSPR003641.2E-10672686No hitNo description
SuperFamilySSF520581.47E-388191001IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.1E-17842981IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.47E-3811041298IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.7E-1111381293IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.2E-1012331249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1307 aa     Download sequence    Send to blast
MESFYLAGVQ PPTKQEEEYL SPVAADVLTE DKVLGETGRW SGSLSKRWPR QETLALLQIR  60
SEMDGSFRDA TLWEEISSKL SDMGYVRSAQ MCKEKYEEVQ RYKRSKDGCA GKQDMSDPEV  120
EMGDEIEEDR MVKPEVGGGI PFSVGKRKRD DGGSNALLEG FMKQVMERQE EMQRRFLEAL  180
EKREAERAAR EEAWRGQVMD RLNREHEQLA AIIAILRHTG DGEQHLHPPV VPTLRLFPHL  240
RRPVPLAPLQ MRPPQPKHDV ARTPLGLHLT NKTKRVKDEP SPSPLFDHQR SRQKFPHFEE  300
GPHGQGSPDL THNTTVRQIP DDYTTSCLPY LRFLLEAAIR GIYNLIRLGE CRVHNDDVAN  360
LLHQAKDAVY CAEDLLDELN YYELQDEIEH NANPSARPEY SDINIRAKEV HGKINYLVEQ  420
MGYLGLNGVR LEQFMFESKL NYSNLTYEET VIGRREELQL LIDTLVLRKN SLTGRIGAGG  480
AEVPGSDRAR PENLSILPIV GEGGVGKTAL AHCAFNHNIV QNHFDLHVWI CVSDGFDNKK  540
LTKKLAWSAA ENKMKLDDLS CLQRIITNGI IHHSTRFLLV IDDLQEDVGQ ENYIAWERFL  600
APLKCARAGS MVLVTTRSLE VAEHIGTMNP LQLEGLPEEI IWHLFSMYAF ELPISDSNQA  660
IDFIGRKISS RLNGSPLGAK ILGCLLNLKL DLGYWKNILE SKLWEIDRQN ETRIWPALQL  720
SYQYLPFHLK RCFSFCSLYP KGHEFDAETL VDSWVAVGLV VSRGSVPAVD IGHEYFDQLV  780
RRSFFQISPT SSSSRYAYVM QGLLYETAQK ISTNECFVIK HSSDLLRIPP KVRHVSILHF  840
SGLSSSDLES LHKYSTLQSV VCTGIDSDVL TTSVLEIWFC HLTNIRMLRF ISCQLKELPG  900
NVGNLILLRY LDISSCDFEA LPDSFWRLRK LEILDAQNCG FHDVPKDIVK LVNLTKIRLK  960
GDLINQLGHI PGVGKLVYLE EMPYYAVGDT PGRRIEELKN MNHLRGALEI SGLHNVTSKE  1020
TAAGAGLDKK IHLDTLTISW HDSIRPDKHN SLQEMEVLEG LRPSPTIKNL EVRFYMGSGF  1080
HPSWLLHGVE DQWLLGHLCG EVISRLESLS ISSCPNITNL LVVETSSSSS RSSSPEYRSL  1140
TKLCITWCRK LRSLDNLIRS WSLPNIRVIR ISNCEKLSSL PFVWQLAHLE DLEVSHCWSL  1200
SWERGLILPS SLKSLKLEAC GELTDSALSC GLRGLPVLAT LELQFCSGLE SFDGETWSGM  1260
PSLRRLKIFC CQELSSIGGA ESIARVESVD IRHCPKLMEL EQPFQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-334881085176758Disease resistance RPP13-like protein 4
6j5t_F2e-334881085176758Disease resistance RPP13-like protein 4
6j5t_G2e-334881085176758Disease resistance RPP13-like protein 4
6j5t_L2e-334881085176758Disease resistance RPP13-like protein 4
6j5t_O2e-334881085176758Disease resistance RPP13-like protein 4
6j5u_A2e-334881085176758Disease resistance RPP13-like protein 4
6j5v_A2e-334881085176758Disease resistance RPP13-like protein 4
6j5w_A2e-334881085176758Disease resistance RPP13-like protein 4
6j6i_C2e-334881085176758Disease resistance RPP13-like protein 4
6j6i_F2e-334881085176758Disease resistance RPP13-like protein 4
6j6i_G2e-334881085176758Disease resistance RPP13-like protein 4
6j6i_L2e-334881085176758Disease resistance RPP13-like protein 4
6j6i_O2e-334881085176758Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612015.10.0putative disease resistance protein RGA3
TrEMBLA0A0D3H6130.0A0A0D3H613_9ORYZ; Uncharacterized protein
STRINGOBART09G07660.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1409969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-21Trihelix family protein