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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OBART09G07680.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 1361aa MW: 153623 Da PI: 5.8513 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 64.1 | 3.1e-20 | 25 | 108 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlr...rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
rWt+qe+l+Lie++ +e r + r + + +++W++v++++r++g+er+ qC+++w+nl ++ykkik+g+ +r
OBART09G07680.1 25 RWTRQEILVLIEGKHAVEGRGSgmgR-AaaasygeaaaALETKWASVAEFCRRHGVERGTAQCRKRWSNLPRDYKKIKDGSAGRG 108
8**************99999884332.03455555655889**************************************998874 PP
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| 2 | trihelix | 47.5 | 4.8e-15 | 156 | 215 | 24 | 86 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+++ +++W++v++++r++g+er+ qC+++w+nl+++y ki+++e++ + + p f +++
OBART09G07680.1 156 AAALETKWASVAEFCRRHGVERGTAQCRKRWSNLARDYNKIERWERGAAGGW---EPSFWDMH 215
446689****************************************864333...36666665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 3.3E-9 | 25 | 108 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 9.3E-4 | 25 | 93 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 6.04 | 25 | 94 | IPR017877 | Myb-like domain |
| PROSITE profile | PS50090 | 5.355 | 152 | 190 | IPR017877 | Myb-like domain |
| Pfam | PF13837 | 2.9E-8 | 161 | 215 | No hit | No description |
| SuperFamily | SSF52540 | 9.69E-52 | 532 | 825 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 7.7E-48 | 581 | 853 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 5.8E-9 | 582 | 741 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 1.6E-11 | 585 | 600 | No hit | No description |
| PRINTS | PR00364 | 1.6E-11 | 660 | 674 | No hit | No description |
| PRINTS | PR00364 | 1.6E-11 | 761 | 775 | No hit | No description |
| SuperFamily | SSF52058 | 1.16E-34 | 882 | 1061 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 9.9E-17 | 902 | 1042 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 1.16E-34 | 1138 | 1347 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 3.3E-14 | 1152 | 1348 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.6E-11 | 1209 | 1225 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1361 aa Download sequence Send to blast |
MSGDPAGAAN AAAAASAAKP PRLPRWTRQE ILVLIEGKHA VEGRGSGMGR AAAASYGEAA 60 AALETKWASV AEFCRRHGVE RGTAQCRKRW SNLPRDYKKI KDGSAGRGGN DARRERRLPG 120 FFDREVYDIL DGRGRGTLGR GSGMGRAAAA SYGEAAAALE TKWASVAEFC RRHGVERGTA 180 QCRKRWSNLA RDYNKIERWE RGAAGGWEPS FWDMHNDARR EMRLPGFFDR EVYDILDSRR 240 LAFVNEMVFD SGRPVPEELM FSDDEEEEDD DEAPPVNPAG STVEEEEVED TEVFDSGRPA 300 AEESLFSDDE EEEAPPVTAA ASAAPAQAPH GQLIALPISE KSVASRQQRT EQRESFSSME 360 PLSYTTPEMK METDAVQLNC DWPMQTLQGH GSSEPSEKSA VQQSDDTNSR LHRDKQWRVQ 420 DKRLVLQRTL TEMHTFIKHA EWWFHKDVFA QLLQDAKDAV NCAEDLLDEI NYHEFQNKVE 480 GHAILFHVQD YHETKIDKIQ GKLEHLVRQM EQLGLYDERQ QFIIESISRE DNLFAEEQTI 540 FGRQKEMSEL IELIVLQENS PTDKQVTEVH AVPDCKRAKL ENVSVLPIVG SGGVGKTTLA 600 NLVFNERSVR DHFDLLIWIC VSDGFDEKKL MKRLAWSVAE SEMKTDDLGC LQRILTNGII 660 HHTRRLLLVL DDVQTDACRE DCHGWKIFLA PLKYARSGSM VLVTTRYQRV AERVGSLKHM 720 FLEGLPEETI WEFFRTLTFG SRNSNSNAVL EPIGRSIVAR LDGSSLGIKI IGRLLSLKLD 780 AKYWKIISES ELWGWPLQEE ASIFTALQLS YQYLPFHLKR CFSFCSLYPR GYEFDAETLV 840 DSWVAVGFVM PSRSILAVDI GHVYFNQLYV ARNDCFMIKS RSDMSRIPPK VRHVSILGNG 900 ELSSTDIECL NTYKTLRSIV CIGVGCDIIT NSVLETWFDH LTRIRMLRFI SCRLKELPCN 960 VGKLIHLRYL DISACDFDKL PTDLFCRLYK LEILDAQNCT LHAVPKDIIK LVNLQRLRLK 1020 NDLISQLGRV PEIGKLTLLQ NMPYYAVDDK PGRGIQELKN MNHLHGGLEI DGLRNVTSRE 1080 EAAGAELAKK IYLDTLVLKW YESIRPQKHN STKEMEVLEA LRPSSNIKHL EVKFYMGDGL 1140 SPMWLRHDEL SSLASFSINS CPNTTTLFLI EPSETGSSRS SSVSFQSLTK LSITWCRSLT 1200 SLDNFLQPEC LPMIKVIQIS NCEELASLPT NNLVHFVHLE DLEICHCWNL NWEPGLALPP 1260 SLKSLKLEAC GEFSDSTLSC LHNLTALTTL NLRFCPSIES ISAQIWSGLW SIESLKIVCC 1320 QGLVTVGGSE SIAGIKNVDI RHCSKLQDLE QPFRSGQADS Q |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 2e-35 | 577 | 1233 | 176 | 837 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP005422 | 0.0 | AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12. | |||
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015612318.1 | 0.0 | putative disease resistance protein RGA3 | ||||
| TrEMBL | A0A0D3H615 | 0.0 | A0A0D3H615_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART09G07680.1 | 0.0 | (Oryza barthii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP14099 | 6 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33550.1 | 6e-31 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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