PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G11970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 412aa    MW: 45361.6 Da    PI: 5.2008
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G11970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK47.14.7e-15200250352
           RWP-RK   3 keisledlskyFslpikdAAk.eLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+++ +dl++yF+ + k+ A   L +++T+LK  CR + ++RWP+R+i+sl
  OBART09G11970.1 200 KTMTKKDLESYFHITQKSTAHiGLSIGTTALKNLCRANDLPRWPYRQIASL 250
                      899**************99983599***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.083180270IPR003035RWP-RK domain
PfamPF020421.5E-15201250IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRK RCRQLRVLIH VNDHRKAVVV  60
LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL  120
YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ  180
PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSTAH IGLSIGTTAL KNLCRANDLP  240
RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK ILSSMPEQLQ  300
GIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNNHRKT VVVLHAGEDG KLDHILVQNN  360
SPDAEASLQS TYRINVSGET PELQAEMLND WYTSFRMDTT GVLYDSDQNG IN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-147CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-163PREDICTED: uncharacterized protein LOC107304984
TrEMBLA0A0D3H7F50.0A0A0D3H7F5_9ORYZ; Uncharacterized protein
STRINGOBART09G11970.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-07RWP-RK domain-containing protein