PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G12390.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 438aa    MW: 46039.9 Da    PI: 8.6682
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G12390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.58.1e-33189286298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l+k
  OBART09G12390.1 189 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQLAK 281
                      678************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  OBART09G12390.1 282 KVWGT 286
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-27191285IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPKRPAEEA DAAGGGSASE GSDAEASAEA ARGHGSSPSP SKTPPPANPN PKSAAAPPSA  60
VAAPASAAGS DSGAASGAAS DSPRAAGNPS GPRSIEVNSD SEDSALPLAS DAYADQAAAA  120
GAGAGADSDD GNTSPLPPPR PSRAEAAAIK PISSRPMDPP PRRSAGGSEP RAKRPRSAAV  180
ASSAEHSKRP SRVWSQADEL VILRGLITYR TKRGVLPGST QDIGKLHSYI RGQLSAKVST  240
TQLSDKVRRL KQKYQMLATR AKTGKEVFPT PHDHNIYQLA KKVWGTMSTA GEGGGSGYDN  300
ADAGESEEEQ YGRESDDDME SGRDNRHRKN QRSVPVTMAN GNGTGIGAVN AIVRGRSEFE  360
KGKDVYPYLW ETVEELSSQH PTGAVFKKAF ELLEGSKAQV MEEKLRKFRL TEMRQQLRRM  420
DLMKDTLSMV LDALEMAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0D3H7K40.0A0A0D3H7K4_9ORYZ; Uncharacterized protein
STRINGOBART09G12390.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-15DNA-binding storekeeper protein-related transcriptional regulator