PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G12650.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 317aa    MW: 34255.5 Da    PI: 8.0506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G12650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.6e-35251162101
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll
  OBART09G12650.1  25 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLL 109
                      9********************6667*****************************************999.........**************** PP

                      XXXXXXX CS
     HSF_DNA-bind  95 ekikrkk 101
                      ++i+r++
  OBART09G12650.1 110 TEIHRRN 116
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3614109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5721115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.38E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3025115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERCGSWSDC EAAAAAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS TFVVWRPPEF  60
ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGEKQLLT EIHRRNDVVR  120
IDGVAVSAAV LRAAALPSHH HAFVGDDGVV AAHGIGMPFP QPHWREPNLP VATRLLALGG  180
PAPSPSSAEA GGAGRAATAA VLMEENERLR RSNTALLQEL AHMRKLYNDI IYFVQNHAGS  240
SSAARSSAPT KLFGVHLSAA PCGAGSKRAS SPEEHPPTSP ATKPRLVLEC DDLSLTVAPS  300
SSSQQQLSAA SSPTSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-231411519129Heat shock factor protein 1
5d5v_B8e-231411519129Heat shock factor protein 1
5d5v_D8e-231411519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411900.0AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.11e-134heat stress transcription factor B-4c
SwissprotQ67U941e-136HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0D3H7N00.0A0A0D3H7N0_9ORYZ; Uncharacterized protein
STRINGOBART09G12650.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-73heat shock transcription factor B4