PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G13210.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 217aa    MW: 23201.1 Da    PI: 6.5398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G13210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-142978254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+h+e+ r+RR+riN  +++Lr l+P+a   +  +++Ka+ L ++v+Y+++L
  OBART09G13210.1 29 RRSHSEAQRKRRERINAHLDTLRGLVPSA---SRVRMDKAALLGEVVRYVRKL 78
                     99***************************...9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-132683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-142781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6882778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-112781No hitNo description
PfamPF000102.7E-112978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-93384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.7E-4123191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAQRKRR ERINAHLDTL RGLVPSASRV  60
RMDKAALLGE VVRYVRKLRS EAAGSEAVVP GEGDEVVVEE EEVEVEGCSC DAGERQAARR  120
VKASVCCADR PGLMSELGDA ERSVSARAVR AEIATVGGRT RSVLELDVAR TAAAGGGSNG  180
ASQLPALQAA LRAVIMSQEE LLAVESYKQR RFSADFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057550.0AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875916.11e-101transcription factor bHLH131
TrEMBLA0A0D3H7U11e-148A0A0D3H7U1_9ORYZ; Uncharacterized protein
STRINGOBART09G13210.11e-149(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-16bHLH family protein