PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G13780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 428aa    MW: 45283.4 Da    PI: 6.0529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G13780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09257305355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OBART09G13780.1 257 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 305
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17252322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-11252309No hitNo description
PROSITE profilePS5088815.65254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16255321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7257305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDMSESSEKG MESNASPGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAVASAG  60
LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGGGMMAG  120
GPYGAADQAM GDAFGGTAEG LMDHHRNVGN DKAEEFAGNG HDEVPSSEVA GGDCSSIGSD  180
SKKRRRPNEV MGTDQVHSSN LPSDSANESA HSKDKGEESS PATTNGGKSK GKGAKETSES  240
QKEEYIHVRA RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLATVNP RLDLNIEGLL SKDLLRFPGV PSSSIGFSPE MMHPQLQLSQ  360
PGLIHGGTAG MANPDVFRRI IQAQLGAKDG SQMPHSLNGS FSDVSQMAYP SLGSQDLSIR  420
PSQDGFQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612420.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0D3H8060.0A0A0D3H806_9ORYZ; Uncharacterized protein
STRINGOBART09G13780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-70bHLH family protein