PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G14660.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 28526.2 Da    PI: 9.7223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G14660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13194239655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  OBART09G14660.1 194 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 239
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-13192243No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15193251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGQLQLQ  60
QQRPGSPDHA ADTVLARFLA GHGGHDNKPP RPAAHFAPPE DSMASHQQQL MYQSHQQQQQ  120
MASAMEGLYR TVSSGGTEST AAAAGNSLLR QSSSPAGFLN HLTMDNDGRH REVPPDAVPC  180
KIRAKRGCAT HPRSIAERVR RTRISERIRK LQELVPNMEK QTNTADMLDL AVDYIKELQK  240
QVKVLNDSRS SCTCSASKQK HFAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307420.0CT830742.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA047O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.16e-90transcription factor bHLH130
TrEMBLA0A0D3H8B20.0A0A0D3H8B2_9ORYZ; Uncharacterized protein
STRINGOBART09G14660.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-34bHLH family protein