PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G15890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 247aa    MW: 26122.2 Da    PI: 10.1079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G15890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.51.3e-3681431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdke 91 
                      lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++PwdLp    a++ e yfFs r+ ++a+  g  ++r + sgyWkatg +k+
  OBART09G15890.1   8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEKP 97 
                      79****************************.8999999***********...457889*******999986324456666799*********** PP

              NAM  92 vlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+ +           +++lvg+k+tL f +++ p+  +t+Wvmheyrl
  OBART09G15890.1  98 VFLRgfgcgggggggGQHLVGVKTTLLFLRAKPPS--RTHWVMHEYRL 143
                      ****999999998877778**********666666..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-424179IPR003441NAC domain
PROSITE profilePS5100543.9938179IPR003441NAC domain
PfamPF023654.4E-239143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDLPGAGDG  60
EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGGG GGGQHLVGVK  120
TTLLFLRAKP PSRTHWVMHE YRLAAAGAVA VAAAGQTKRG NHSCMAQPGE WVVCRIFLKN  180
NRSSRRRAGD ADGETPVTGV HGHRRRQPSP SPSSSSCVTA EVSDGEGEEE VSSGSINGAP  240
SASQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-31718114170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-178NAC domain-containing protein 83
TrEMBLA0A0D3H8R01e-178A0A0D3H8R0_9ORYZ; Uncharacterized protein
STRINGOBART09G15890.11e-179(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-32NAC domain containing protein 83