PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART09G17250.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 200aa MW: 21356.4 Da PI: 4.7293

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G17250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	7.1e-09	31	71	4	44
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rq OBART09G17250.1 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71 456***********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-11	14	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-7	18	71	IPR009057	Homeodomain-like
CDD	cd00086	3.77E-7	30	70	No hit	No description
Pfam	PF00046	2.5E-6	31	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL 60 ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKEEFVGAGG AATLYSSAEG 120 GGTTTTTTAK LMPHFGSDDV DAGLFLRPSS QHHPPPPHAG AGFTSSEPAA DHQSFNFHSS 180 WPSSTEQTCS STPWWEFESE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	25	GGKGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059755	0.0	AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBank	AK103160	0.0	AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBank	AP005681	0.0	AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	CT830847	0.0	CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612316.1	1e-108	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	1e-109	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-109	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0D3H980	1e-143	A0A0D3H980_9ORYZ; Uncharacterized protein
STRING	OBART09G17250.1	1e-144	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-15	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]