PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART09G17440.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 129aa MW: 13023.5 Da PI: 5.4789

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G17440.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	82.7	9.2e-26	4	56	101	153
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e OBART09G17440.1 4 VAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 56 5688***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.2E-23	5	56	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.2E-23	7	55	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AEVAYQTAVS IGGHVFKGIL HDVGPEALAV 60 AGGGGASEYH FRLTGDGSSP STAAAGEAGS GGGGNIIVSS AVVMDPYPTP GPYGAFPAGT 120 PFFHGHPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241285	0.0	AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
GenBank	AP005314	0.0	AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBank	AP005567	0.0	AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611315.1	1e-85	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0D3H9A8	3e-85	A0A0D3H9A8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0IMR7	3e-84	A0A0E0IMR7_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QU83	3e-84	A0A0E0QU83_ORYRU; Uncharacterized protein
TrEMBL	A2Z3E0	3e-84	A2Z3E0_ORYSI; Uncharacterized protein
TrEMBL	I1QQN4	3e-84	I1QQN4_ORYGL; Uncharacterized protein
TrEMBL	Q652K4	3e-84	Q652K4_ORYSJ; Os09g0531600 protein
STRING	ORUFI09G18770.1	5e-85	(Oryza rufipogon)
STRING	OS09T0531600-01	5e-85	(Oryza sativa)
STRING	ONIVA09G18410.1	5e-85	(Oryza nivara)
STRING	ORGLA09G0136300.1	5e-85	(Oryza glaberrima)
STRING	OBART09G17440.1	5e-86	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-20	Lateral root primordium (LRP) protein-related