PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G02340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 225aa    MW: 24701.3 Da    PI: 10.3319
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G02340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.95.3e-06168196432
                      -SS--HHHHHHHHHHHHHSSS--HHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeeree 32 
                        ++t++q+e+Le++++++++ps ++r++
  OBART10G02340.1 168 YVQYTPDQVEALERVYAECPKPSFSRRQQ 196
                      6789*********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-6147196IPR009057Homeodomain-like
CDDcd000860.00305171196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPFPHGGVGP AAGAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSSRN TMTVAAEVDA  60
SPDGEERRXQ ACNRTTIYRF LPSFSFFFLS FVSPSHMSAY FFSSSSPDDF TFARNLSCCC  120
VEGGEGGNFG GGGGRRGGWR QRWRCPMRSG SGSDGGGYDK AGMDSGKYVQ YTPDQVEALE  180
RVYAECPKPS FSRRQQSPTS SPSRRSRSGS QNRSLQMFDK KRMKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072070.0AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBankAC1334500.0AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAK1002500.0AK100250.1 Oryza sativa Japonica Group cDNA clone:J023060H19, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633127.16e-97homeobox-leucine zipper protein ROC4-like
TrEMBLA0A0D3HB611e-160A0A0D3HB61_9ORYZ; Uncharacterized protein
STRINGOBART10G02340.11e-161(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2029646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.12e-10HD-ZIP family protein