PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G06850.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 311aa    MW: 35869.4 Da    PI: 11.1774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G06850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09931241648
                      HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       k+ G ++W+++ar m+ +R++ +c++rw+ +l
  OBART10G06850.1  93 AKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 124
                      5889*************.***********9886 PP
2Myb_DNA-binding23.41.4e-07132175348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OBART10G06850.1 132 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 175
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001643.8E-353102IPR006032Ribosomal protein S12/S23
Gene3DG3DSA:2.40.50.1403.1E-191491IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502491.88E-191499IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS512949.34469128IPR017930Myb domain
SMARTSM007171.582126IPR001005SANT/Myb domain
CDDcd001671.09E-691124No hitNo description
PfamPF002493.4E-792123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-1292133IPR009057Homeodomain-like
SuperFamilySSF466895.59E-17104176IPR009057Homeodomain-like
PROSITE profilePS500907.364125175IPR017877Myb-like domain
SMARTSM007178.4E-4129177IPR001005SANT/Myb domain
CDDcd001670.00125132174No hitNo description
PfamPF002491.2E-5132174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-8134174IPR009057Homeodomain-like
PROSITE profilePS512949.199265311IPR017930Myb domain
SMARTSM0071720269311IPR001005SANT/Myb domain
CDDcd001670.00235273309No hitNo description
Gene3DG3DSA:1.10.10.601.0E-5274310IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGAGRKLRTH RRNQRWADKA YKKSHLGNEW KKPFAGSSHA KGIVLEKIGI EAKQPNSAIC  60
KCARVQLVKN GKKIAAFVPN DGCLNFIKEN RLAKENGFRR WSRVARSMPR RSARSCRDRW  120
RHHLARDVYH RPFTARDDDE LLRLHYRLGD RWKEIGRAVY GRTSRVMKHR WRELRRGGFL  180
ATAARKEQAA LDMADDMVET SEVEEPADQS LPSLELQRST LADTLASSFG SCSLATDHVM  240
DPLAGSLALG KYQFFTIIKI KDVFAGTLIR HPWLPRLVKE NGFRRWSRVA RSMPCCPARS  300
CRDRWCHHLA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SL8e-581109711540S ribosomal protein S23
4v7e_BX8e-581109711540S ribosomal protein S12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927490.0AC092749.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence.
GenBankAC1235940.0AC123594.1 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.16e-83transcription factor MYB73
TrEMBLA0A0D3HCL70.0A0A0D3HCL7_9ORYZ; Uncharacterized protein
STRINGOBART10G06850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-12myb domain protein 70