PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART10G07150.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 215aa MW: 22632.4 Da PI: 7.7712

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART10G07150.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	24.1	1.2e-07	115	145	43	73
TCP 43 kdsktieWLlqqakpaikeltgtssssasec 73 d++ti+WLl+ a+p+i+ +t+t +++as + OBART10G07150.1 115 FDGQTIDWLLRLAEPSIIPATSTITTPASLS 145 59*********************66666222 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGEGNGEEEA TSGKSILSQR NAAAVTHPNS YWRSLKEGLC EVQETSVGEA LVMVVGIGGS 60 RVAAEGEAGI VPHQFHGGGS SGTALEKHLV PATSNTDGTV LTVRKPPSKD SHSKFDGQTI 120 DWLLRLAEPS IIPATSTITT PASLSTSSPF SLHSNDLLFP YSAPFILGKH LHAADNHKPP 180 PSRSLPLPTP PPRASGRFPR GPTSASSIAS WLCWR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083945	1e-156	AC083945.3 Oryza sativa Japonica Group chromosome X clone OSJNBa0058E19, complete sequence.
GenBank	AC093093	1e-156	AC093093.5 Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete sequence.
GenBank	AP014966	1e-156	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876413.1	3e-71	LOW QUALITY PROTEIN: transcription factor TCP23-like
TrEMBL	A0A0D3HCQ3	1e-154	A0A0D3HCQ3_9ORYZ; Uncharacterized protein
STRING	OBART10G07150.1	1e-154	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23835	2	2