PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G07700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 388aa    MW: 43281.4 Da    PI: 5.9489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G07700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.15.1e-64216387201373
             GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                      +++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++++r+i
  OBART10G07700.1 216 VIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMSAEQHCVARDI 309
                      789******************************************************************************************* PP

             GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      vn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OBART10G07700.1 310 VNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 387
                      ***************************************************65.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.6181369IPR005202Transcription factor GRAS
PfamPF035141.8E-61216387IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDGRINSLLS TIPQDFTSMS ARASNHAYIC SDDSQMPYYN NSVPSGGNGR FYITQNHQDA  60
HYASSDDGSQ KIGSSPQAFE APYCTLESSS ANGAHPAHSS ASSHSISPIS GSPLSHHDSH  120
SDHTYNSPPS ASCVTEITDL QIKLRELENA ILGPELDIAY DSPESALQPN IMATPENWRQ  180
LLGINTGDLK QVIIACGKAV AENDVRLTEL LISELVIVVN FAYQLHHTPD ESVSTENHRD  240
RILRMVKSLS PRLVTLVEQE SNTNTRPFFP RYLETLDYYT AMFESIDVAL PRDDKRRMSA  300
EQHCVARDIV NLIACEGAER VERHEVFGKW KARLTMAGFR PYPLSSVVNS TIKTLLHTYN  360
SFYRLEERDG VLYLGWKNRV LVVSSAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-25217387203374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133350.0AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614551.11e-123scarecrow-like protein 21
RefseqXP_015614552.11e-123scarecrow-like protein 21
SwissprotQ9S7H52e-89SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A0D3HCW80.0A0A0D3HCW8_9ORYZ; Uncharacterized protein
STRINGOGLUM10G07400.41e-136(Oryza glumipatula)
STRINGORUFI10G08100.41e-136(Oryza rufipogon)
STRINGONIVA10G07150.31e-136(Oryza nivara)
STRINGOBART10G07700.21e-136(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.12e-91SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]