PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1149aa    MW: 127610 Da    PI: 6.8352
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.44.4e-561382552118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  OBART10G08060.1 138 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 231
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  OBART10G08060.1 232 QRRTYWMLEEDFMHIVLVHYLETK 255
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.93134260IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-77137255IPR005559CG-1 DNA-binding domain
PfamPF038599.8E-50140253IPR005559CG-1 DNA-binding domain
CDDcd001020.00609569657No hitNo description
Gene3DG3DSA:2.60.40.102.0E-6569655IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.42E-18570656IPR014756Immunoglobulin E-set
PfamPF018332.1E-8570648IPR002909IPT domain
SuperFamilySSF484032.95E-15762865IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-16764867IPR020683Ankyrin repeat-containing domain
CDDcd002041.69E-11765863No hitNo description
PROSITE profilePS5029715.459771865IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736804836IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-89651017IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37966988IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748967996IPR000048IQ motif, EF-hand binding site
PfamPF006120.026968987IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00599891011IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.5429911014IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-49921011IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1149 aa     Download sequence    Send to blast
MTCRTQGQNR LSPHPATVIQ QVSNSLCLSS TRSHRSIPET SEVKTSLLLL LLFISPPNIP  60
HKKRKKEKTQ TPSRGGRERS PAPLRSPGVR ACGARRASHG GGAAAGAHAS ASIPPTTAMA  120
ADARRFAVVP QLDIAQILKE AQQRWLRPAE ICEILKNYKS FRIAPEPPNR PQSGSLFLFD  180
RKVLRYFRKD GHNWRKKKDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRTYWMLE  240
EDFMHIVLVH YLETKGGKSR TRGNNDMHQA AVMDSPLSQL PSQTIDGESS LSGQFSEYEE  300
AESGGTGYHS FTQMQQQQNG IGPVTDASMF SSRVSASSIG NYQGQHAMGH TTNFYSSNQH  360
DSPLVLSDPN LELENNGHES LWNGVMKPDE GTVQMTHLQP PVHPEQGMFT TEGQGVEYLT  420
FDEVYSDGLS LKDIGAAGAD VEPFWQFSSN SYLTEAIAFQ LSSATADISA TENSVQQNDG  480
SLGAAIGFPF LKTQSSNLSD ILKDSFKKSD SFTRWMSKEL LDVEDSQIQS SSGAYWNTEE  540
ADSIIEASSR EPLDQFTVAP MVLQDQLFSI VDFSPSWTYA GSKTKVLVTG RFLHANEVTE  600
RCKWSCMFGE VEIQAEISAD GTLRCYSPPH KPGRVPFYVT CSNRLACSEV REFEFRPSDS  660
QYMDAPSPLG ATNKVYFQIR LDNLLSLGPD VYQATITNPS KEMIDLSKKI SSLLANNDEW  720
SKLLKLADDN EPLSHDQQDQ YAENLIKEKL HVWLLHKVGD GGKGPSVLDD EGLGVLHLAA  780
SLGYDWAIRP TVTAGVNINF RDFHGWTALH WAAFCGRERT VVALIALGAA PGALTDPHPN  840
YPAESTPADL ASANGHKGIS GFLAESSLTS HLQALNLKEA NMSEISGLPG IGDITERNAS  900
QPAIGDSLGA VRNAAQAAAR IYQVFRVQSF QRKQAVQYEG DKGGISDEHA LSLLSMKPSK  960
SGQIDPLHAA ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV  1020
EKVILRWRRR RAGLRGFRPT EGAIESSSGG TSSNLVTDKP AGDDYDFLQE GRKQTEERLQ  1080
KALARVKSMV QYPEARDQYQ RILNVVSKMQ ESQTVQEKIL DESTEMDEGD FMSEFKELWD  1140
DDTPLPGYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D3HD110.0A0A0D3HD11_9ORYZ; Uncharacterized protein
STRINGOBART10G08060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains