PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08060.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1135aa    MW: 126050 Da    PI: 6.8903
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.44.3e-561382552118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  OBART10G08060.2 138 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 231
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  OBART10G08060.2 232 QRRTYWMLEEDFMHIVLVHYLETK 255
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.93134260IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-77137255IPR005559CG-1 DNA-binding domain
PfamPF038599.7E-50140253IPR005559CG-1 DNA-binding domain
CDDcd001020.00601555643No hitNo description
Gene3DG3DSA:2.60.40.102.0E-6555641IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.27E-18556642IPR014756Immunoglobulin E-set
PfamPF018332.1E-8556634IPR002909IPT domain
SuperFamilySSF484032.95E-15748851IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-16750853IPR020683Ankyrin repeat-containing domain
CDDcd002041.67E-11751849No hitNo description
PROSITE profilePS5029715.459757851IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736790822IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-89511003IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37952974IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748953982IPR000048IQ motif, EF-hand binding site
PfamPF006120.026954973IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059975997IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.5429771000IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4978997IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1135 aa     Download sequence    Send to blast
MTCRTQGQNR LSPHPATVIQ QVSNSLCLSS TRSHRSIPET SEVKTSLLLL LLFISPPNIP  60
HKKRKKEKTQ TPSRGGRERS PAPLRSPGVR ACGARRASHG GGAAAGAHAS ASIPPTTAMA  120
ADARRFAVVP QLDIAQILKE AQQRWLRPAE ICEILKNYKS FRIAPEPPNR PQSGSLFLFD  180
RKVLRYFRKD GHNWRKKKDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRTYWMLE  240
EDFMHIVLVH YLETKGGKSR TRGNNDMHQA AVMDSPLSQL PSQTIDGESS LSGQFSEYEE  300
AESGGTGYHS FTQMQQQQNG IGPVTDASMF SSRVSASSIG NYQGQHAMGH TTNFYSSNQH  360
DSPLVLSDPN LELENNGHES LWNGVMKPDE GTVQMTHLQP PVHPEQGMFT TEGQGVEYLT  420
FDEVYSDGLS LKDIGAAGAD VEPFWQLSSA TADISATENS VQQNDGSLGA AIGFPFLKTQ  480
SSNLSDILKD SFKKSDSFTR WMSKELLDVE DSQIQSSSGA YWNTEEADSI IEASSREPLD  540
QFTVAPMVLQ DQLFSIVDFS PSWTYAGSKT KVLVTGRFLH ANEVTERCKW SCMFGEVEIQ  600
AEISADGTLR CYSPPHKPGR VPFYVTCSNR LACSEVREFE FRPSDSQYMD APSPLGATNK  660
VYFQIRLDNL LSLGPDVYQA TITNPSKEMI DLSKKISSLL ANNDEWSKLL KLADDNEPLS  720
HDQQDQYAEN LIKEKLHVWL LHKVGDGGKG PSVLDDEGLG VLHLAASLGY DWAIRPTVTA  780
GVNINFRDFH GWTALHWAAF CGRERTVVAL IALGAAPGAL TDPHPNYPAE STPADLASAN  840
GHKGISGFLA ESSLTSHLQA LNLKEANMSE ISGLPGIGDI TERNASQPAI GDSLGAVRNA  900
AQAAARIYQV FRVQSFQRKQ AVQYEGDKGG ISDEHALSLL SMKPSKSGQI DPLHAAASRI  960
QNKYRGWKGR KEFLLFRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI LRWRRRRAGL  1020
RGFRPTEGAI ESSSGGTSSN LVTDKPAGDD YDFLQEGRKQ TEERLQKALA RVKSMVQYPE  1080
ARDQYQRILN VVSKMQESQT VQEKILDEST EMDEGDFMSE FKELWDDDTP LPGYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1014790.0AK101479.1 Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D3HD120.0A0A0D3HD12_9ORYZ; Uncharacterized protein
STRINGOBART10G08060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains