PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 393aa    MW: 41188.2 Da    PI: 6.3793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.4e-15174225155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  OBART10G08120.1 174 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 225
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-14172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-15172229No hitNo description
SuperFamilySSF474595.1E-17173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-12174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAAAGG GGSWDDPGLF AAEASLDVIQ  60
GVDEWEVDQD QHASSSSKVA ARPPAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF  120
EGVMDLDGGN WDAAACSSML LHGFQEIEIP AAAAGKRKRR RAKAAKNREE IESQRMTHIA  180
VERNRRRQMN EYLAVLRSLM PPSYAQRGDQ ASIVGGAINY VRELEQLLQT LEARRTIKDH  240
IDGGAGESPS PFAGFFAFPQ YSTATSGHGG GGDAHSRIVV KPAETTTTAA GGGAGAAIAD  300
IEASMVEGHA SVKVQARRRP RQLLKLVAGL HQLGLTTLHL NVTTVAAMAM YSFSLKVEDG  360
CKLGSVEEIA TAVHEILERM QEEQAFADAK TSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160KRKRRR
2156160RKRRR
3174185RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.11e-150transcription factor bHLH96
SwissprotQ9C7T48e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3HD210.0A0A0D3HD21_9ORYZ; Uncharacterized protein
STRINGOBART10G08120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]