PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08680.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 691aa    MW: 80150.3 Da    PI: 8.3877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08672689926
                      GGGTS--TTTTT-SS-SS CS
          zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                      +++ G+C+yG++CkF+H+
  OBART10G08680.1 672 YQQQGWCPYGENCKFMHD 689
                      8999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.3E-5124167IPR003034SAP domain
SuperFamilySSF689062.75E-5125167No hitNo description
PROSITE profilePS5010314.352663691IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6665690IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015665690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6667689IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6672689IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAAPAADDDD HRAALPREED DGEEEEGSEE EVESDEEEEE EGEGYDWSEE DDPEAASLAG  60
ICDPDAGSDD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL  120
AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIREQIEYEL YPLCDSCKGD  180
VVVFEQNIYK RKKGAPRGVK GHLCGQRTNA GRIIKESYGT KKQQHTFTIE ILWSRGYKPW  240
PPLHPLLIKG RNLYKDKTMR QPWLDEEERN RALQEKHARG YVARKTREVR IKDKENERMR  300
RLNRNKENKS KGQDNMNKKS SQAVFPQHTV TTNTVQKRAE KIIPSLQHGE SGNSSQQHLS  360
SKQTPTEQLL HYLPQFPHPQ QHNEVLLQKG TSRTSTTQLI NHQAPSLQHA VKVETTQQQQ  420
QQQPPKSIKP APIQQSSAYP QQYPKHQHHN QALPRVPPSQ EQRAAVSQTS AARQDFTNHQ  480
APPSRQHGGS ENMRRQEISS RPTPTPTPTP QQAVSYTQQQ PPNHQYRNEA FWQQGGTSTS  540
RTGFMDRQSN NWGSTDHDKP AFQPFTQKAK TYQHGSNGSG HHQARVDRET HQPLRSRNQD  600
YHWEDQSYHH QQNHHQNYYG HRQMSQDQYH HQQNHHQNYH GRQGMNGNQY HDRQNHNQNP  660
QRFRPWKPCF IYQQQGWCPY GENCKFMHDL R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876398.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A0D3HD860.0A0A0D3HD86_9ORYZ; Uncharacterized protein
STRINGOBART10G08680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]