PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G09210.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 176aa    MW: 19876 Da    PI: 10.3556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G09210.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.6e-19481652112
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 
                       +G+ F P+d el     +k v g+    l++v+++++i++++P  L+ + + +ee+  +yfF +r+ + +  ++++++r++k g+Wka+g +k
  OBART10G09210.2  48 LVGCYFVPKDLELFAILRCKLVCGQLpGALNNVFEHIRILEFHPALLHeTYIGKEEDgYIYFFNRRQFAMKagNKRQPTRVAKGGTWKASGGSK 141
                      68************665555555555334456799************844555544435699999987665336778999************** PP

              NAM  91 evlsk..kgelvglkktLvfykgr 112
                      +v sk  +g ++g k t++fy+ r
  OBART10G09210.2 142 TVRSKkvDGIDIGQKLTMMFYERR 165
                      ***98888888**********644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2342175IPR003441NAC domain
PROSITE profilePS5100522.80147176IPR003441NAC domain
PfamPF023652.8E-849164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSAWLPQLEI AAEQPPEGGG DGGGNNNGKW KGKEKVVPKH RKNRHGMLVG CYFVPKDLEL  60
FAILRCKLVC GQLPGALNNV FEHIRILEFH PALLHETYIG KEEDGYIYFF NRRQFAMKAG  120
NKRQPTRVAK GGTWKASGGS KTVRSKKVDG IDIGQKLTMM FYERRFEGDR NPIKTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839431e-125AC083943.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence.
GenBankAP0149661e-125AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-90NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0D3HDE81e-128A0A0D3HDE8_9ORYZ; Uncharacterized protein
STRINGONIVA10G08840.11e-100(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-08NAC family protein