PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G11560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 225aa    MW: 25801.7 Da    PI: 10.9305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G11560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07133180348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT  E   lv++v ++G g+W+   r +     Rt  ++k++w+++l
  OBART10G11560.1 133 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 180
                      6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.53126184IPR017930Myb domain
SuperFamilySSF466895.85E-15128216IPR009057Homeodomain-like
SMARTSM007170.0016130182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10133181IPR009057Homeodomain-like
CDDcd116607.46E-19134181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEKAAAAACG WRKGLEEGEP EWEAMELEAA APAIFPADGG GGGGRRSPAA WRIYFNQHMR  60
MTSTICYKGP KMKQTWTNDF IPKDGCKRGP RGARKRQTFP SRGARTRRAF PLQQLCFGTT  120
RDKRCRLRKN NDHWTIKEVT NLVQGVSKHG VGRWTELKRD FFSTSIRTSV HLKDKWRNLL  180
KACGIDFTST AKGNAQKTML WPLDKRLIEQ ITQLAYKHPY PRQKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.11e-131uncharacterized protein LOC4348738 isoform X2
TrEMBLA0A0D3HE551e-168A0A0D3HE55_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EYD41e-167A0A0E0EYD4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QZP71e-168A0A0E0QZP7_ORYRU; Uncharacterized protein
STRINGORUFI10G12080.11e-168(Oryza rufipogon)
STRINGOBART10G11560.11e-168(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.29e-17TRF-like 6