PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART10G15260.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 291aa MW: 30844.7 Da PI: 7.4786

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART10G15260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	24.8	6.7e-08	54	75	4	25
YABBY 4 fssseqvCyvqCnfCntilavs 25 +s eq+Cyv+C +C+t+l+vs OBART10G15260.1 54 DSEQEQLCYVHCHYCDTVLVVS 75 56789****************8 PP
2	YABBY	132.1	7.1e-41	178	245	105	170
YABBY 105 edeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl OBART10G15260.1 178 AKEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 245 44555665544489****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-5	56	75	IPR006780	YABBY protein
Pfam	PF04690	3.4E-39	178	245	IPR006780	YABBY protein
SuperFamily	SSF47095	7.2E-8	187	238	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-4	194	237	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSSSSSSSAS SAAAAAFRPA VVQREQQVVE EKFPAAAAAM REMVLPPVAA AAADSEQEQL 60 CYVHCHYCDT VLVVSERAEQ QPVQDGDGEV RPLHQPALPP PPPPAAHFPH SLNLAPANPP 120 HHHSLLDEIS TVNSPTQLLL EQHGLGGLMA SAASCRNNNS PAAAAAPPPP TSQGKAAAKE 180 PSPRTNTAVI NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA AAKNWAHFPH 240 IHFGLVPDHQ GLKKTSLLPQ DHQRKDGLLK EGLYAAAAAA AAAANMGVAP Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	0.0	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613818.1	1e-147	protein YABBY 3 isoform X1
Swissprot	Q8L556	1e-148	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A0D3HFG9	0.0	A0A0D3HFG9_9ORYZ; Uncharacterized protein
STRING	OBART10G15260.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	7e-45	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]