PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G19000.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 670aa    MW: 74316.7 Da    PI: 5.2614
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G19000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.57.7e-592173371121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  OBART10G19000.2 217 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 309
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  OBART10G19000.2 310 RYPFLEAYSKPIRCISRNRTSRPLGSAK 337
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF555503.04E-5587656IPR000980SH2 domain
PROSITE profilePS500019.366594670IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGLTGRRTKP SIAASGDGGG GAGICGGGGD RYCELSDVRI ELDLREEVAE GGGDKVPFLA  60
LGEGNKLILF PLLGFHREAP TPDSSYPWTD ITNLTEVNEC PLDNWFHVGC EVTENIMRLH  120
IDGDLVAETH LHSLYNEPDY QDDANQINLL GSKDKLEGYV YNMELSCMLG NIQQQFAKNP  180
PFKLSIDYSC SDGIEEGDDG IWNIVGGKAS CRRNFILEVI LVDAFGEAAK DREIVASLVY  240
ADNGALVEKS RDDSEPPLLI SCDGIEYPAV SRPLPIIRGR ALFKLKISQL SSKCDNKLFR  300
IFFSTLGMKR YPFLEAYSKP IRCISRNRTS RPLGSAKRIG SASMDDIQSI NNCEGFGHSG  360
KANGRLQTHD PSSVVCFHPS KFSKIEDDVQ KTSSQNKHAK KMVLDKGAQD VMVSDSTASD  420
YDSMDAGSSW SLSDGDDVES FSDAEIFRYC LDGTHERSKF LRAAAPSVNE DDLIKLANQV  480
SLYSGCTHHR NQILISKQLL QEGADIWSII SKNNERALWS SAVPEMKAKF LEIVHPSNRG  540
LSEQDFEVLR GIAGCGDDIG RDEFDKLWSW LYPVAIALSK DKINRLWDFT AHRWIEGLIT  600
LQETENALRS SRDRLMKPGT FVLRFPTTRS WPHPDAGSLV VTYVGSDNSI HHRLLSLDVR  660
VDRLPSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0D3HGR80.0A0A0D3HGR8_9ORYZ; Uncharacterized protein
STRINGONIVA10G21500.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-138SH2 domain protein B