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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OBART11G01460.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
GRAS |
| Protein Properties |
Length: 468aa MW: 50028.8 Da PI: 6.1512 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART11G01460.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 409 | 4.5e-125 | 102 | 461 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95
+l+ +cAe v++++l +a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kfsh
OBART11G01460.1 102 QLIHNCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKFSH 195
78889*********************************************************777777777799999***************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +l
OBART11G01460.1 196 FTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNL 284
******************************************************....***************************.7******* PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++e+L v ++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er+
OBART11G01460.1 285 DPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERH 371
*****************99..999999999999....**********************.899******************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF+ +l +aa+qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr
OBART11G01460.1 372 VVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 461
*********************999987.**************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0009630 | Biological Process | gravitropism |
| GO:0009956 | Biological Process | radial pattern formation |
| GO:0048366 | Biological Process | leaf development |
| GO:0051457 | Biological Process | maintenance of protein location in nucleus |
| GO:0090610 | Biological Process | bundle sheath cell fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MVRKRPASDM DLPPPRRHVT GDLSDVTAAA AGAPTLSASA QLPALPTQLP AFHHTDMDLA 60
APAPPAPQQV AAGEGGPPST AWVDGIIRDI IASSGAAVSV AQLIHNCAES VNADNLDEAH 120
RALLEIAELA TPFGTSTQRV AAYFAEAMSA RLVSSCLGLY APLPNPSPAA ARLHGRVAAA 180
FQVFNGISPF VKFSHFTANQ AIQEAFEREE RVHIIDLDIM QGLQWPGLFH ILASRPGGPP 240
RVRLTGLGAS MEALEATGKR LSDFADTLGL PFEFCPVADK AGNLDPEKLG VTRREAVAVH 300
WLRHSLYDVT GSDSNTLWLI QRLAPKVVTM VEQDLSHSGS FLARFVEAIH YYSALFDSLD 360
ASYSEDSPER HVVEQQLLSR EIRNVLAVGG PARTGDVKFG SWREKLAQSG FRVSSLAGSA 420
AAQAALLLGM FPSDGYTLIE ENGALKLGWK DLCLLTASAW RPIQASGR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073467 | 0.0 | AK073467.1 Oryza sativa Japonica Group cDNA clone:J033044H21, full insert sequence. |
