PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G01610.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 359aa MW: 39757.6 Da PI: 8.2042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G01610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.4e-51	19	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd e++ yL +k + +++ i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++ OBART11G01610.1 19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFN 111 79***********************888.56***********99999************************************9 PP NAM 95 k.............kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy grapkg+kt+Wvmhe+rl OBART11G01610.1 112 LqptsyggssnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 158 888999888887766677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-59	16	185	IPR003441	NAC domain
PROSITE profile	PS51005	54.003	19	185	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	20	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE 60 PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF NLQPTSYGGS 120 SNNKNNKQLV GMKKTLVFYM GRAPKGTKTN WVMHEFRLHG NLHNHHPNLR LNPKEEWVVC 180 KVFHKKQGDE AINNQQQQPQ PAVDQYSAGT PNNGSSVEAG DDDDDLFQLD SIIDPSIYFS 240 NSSAANILSA PPNMSNSVVA ANYGASTTTT STASAGSFQQ QPNYYSLINK SISSSNVSSW 300 NNMPPPPPVA GGGVHGIGSS YSLQHQAAMV KALRDVIRLP NPLGMPQYKL DGAYLWDSS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF NLQPTSYGGS  120
SNNKNNKQLV GMKKTLVFYM GRAPKGTKTN WVMHEFRLHG NLHNHHPNLR LNPKEEWVVC  180
KVFHKKQGDE AINNQQQQPQ PAVDQYSAGT PNNGSSVEAG DDDDDLFQLD SIIDPSIYFS  240
NSSAANILSA PPNMSNSVVA ANYGASTTTT STASAGSFQQ QPNYYSLINK SISSSNVSSW  300
NNMPPPPPVA GGGVHGIGSS YSLQHQAAMV KALRDVIRLP NPLGMPQYKL DGAYLWDSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-49	17	186	18	169	NAC domain-containing protein 19
3swm_B	5e-49	17	186	18	169	NAC domain-containing protein 19
3swm_C	5e-49	17	186	18	169	NAC domain-containing protein 19
3swm_D	5e-49	17	186	18	169	NAC domain-containing protein 19
3swp_A	5e-49	17	186	18	169	NAC domain-containing protein 19
3swp_B	5e-49	17	186	18	169	NAC domain-containing protein 19
3swp_C	5e-49	17	186	18	169	NAC domain-containing protein 19
3swp_D	5e-49	17	186	18	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269\|PubMed:19135985}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:19135985}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067922	0.0	AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBank	CT829509	0.0	CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
GenBank	KP033191	0.0	KP033191.1 Oryza sativa cultivar Dong Jin NAC-related protein 45 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615868.1	0.0	NAC domain-containing protein 45
Swissprot	Q2RB33	0.0	NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBL	A0A0D3HHN5	0.0	A0A0D3HHN5_9ORYZ; Uncharacterized protein
STRING	OBART11G01610.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5120	30	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	4e-69	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zheng X,Chen B,Lu G,Han B Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9 [PMID:19135985]