PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02350.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 192aa    MW: 21391.4 Da    PI: 9.5052
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02350.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.32.3e-1761268128
              NAM   8 hPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +P  ++l+++yL + ++gk+++ +e  + ++d+y +eP+dL  k     +   e+    fF++ ++++ +++rk+r++ +g+W  + + k v++
  OBART11G02350.2   6 RPIPKDLITFYLPRLIAGKPTKDTEKfVCRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKN 96 
                      57789***************6655544999***********843454222..2445779999999999****************8866.88999 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k g +vg  + + f     ++g+ tdW+m+e + 
  OBART11G02350.2  97 KAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 126
                      9*************7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.3081146IPR003441NAC domain
PfamPF023657.0E-86125IPR003441NAC domain
SuperFamilySSF1019411.44E-178146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLFFPRPIPK DLITFYLPRL IAGKPTKDTE KFVCRADVYG SEPSDLAGKF APVPRCEKGG  60
RLFFTSCKRH KGSSTRKERT AGDGTWVRQN SKGVKNKAGV KVGETQNFRF KKDGSYTDWL  120
MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP PDSAARQESA AFVQQKPAPQ VSEPPCDKKK  180
RDDVAEEAPA AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619129.11e-129NAC domain-containing protein 41
TrEMBLA0A0D3HHY61e-140A0A0D3HHY6_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02060.11e-129(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-07NAC domain containing protein 50