PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 113aa    MW: 13041.7 Da    PI: 9.1489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.73.5e-234105273373
             GRAS 273 aklpre.seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      a+ p+e s+ r+++Er +l+r++v v+a egaer+er et+++W++r +++ +++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r
  OBART11G02420.1   4 ATTPEEgSHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRVELRQVAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGR 97 
                      44454415899***************************************************************999***************** PP

             GRAS 366 pLvsvSaW 373
                       L++ SaW
  OBART11G02420.1  98 ILYAHSAW 105
                      ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.67186IPR005202Transcription factor GRAS
PfamPF035141.2E-204105IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MLGATTPEEG SHLRVVLERD VLRRAAVGVI AGEGAERVER PETYRRWQAR NRRVELRQVA  60
VEGDVVEAVR RRVRRRHHEE FVIEEDAGWL LQGWKGRILY AHSAWVVAED GAH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877156.12e-55scarecrow-like protein 14
TrEMBLA0A0D3HHZ84e-71A0A0D3HHZ8_9ORYZ; Uncharacterized protein
TrEMBLA2ZB913e-67A2ZB91_ORYSI; Uncharacterized protein
STRINGOGLUM11G02110.16e-68(Oryza glumipatula)
STRINGOBART11G02420.17e-72(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-11SCARECROW-like 14