PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02570.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 161aa    MW: 18213.9 Da    PI: 10.9295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS94.91.3e-2950150277374
             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpL 367
                      +++ er+ vEr+llg+ei+ vvacegaer+erhe++++W +r+e++G++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL
  OBART11G02570.1  50 AAAAERARVERVLLGEEIRGVVACEGAERVERHERARQWAARMEAVGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPL 143
                      45689****************************************************************8888****884345678******** PP

             GRAS 368 vsvSaWr 374
                      ++v+aWr
  OBART11G02570.1 144 YAVTAWR 150
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.151127IPR005202Transcription factor GRAS
PfamPF035144.4E-2750150IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRIETLREQG MRRLPPAVLE LEASLLDLGM AAGGEQRSWV RFREKRRSAA AAAERARVER  60
VLLGEEIRGV VACEGAERVE RHERARQWAA RMEAVGMERV GLSYSGAMEA RKLLQSCGWA  120
GPYEVRHDAG GHGFFFCWHK RPLYAVTAWR PAASRRGHTR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514800.0AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.19e-75scarecrow-like protein 3
TrEMBLA0A0D3HI191e-109A0A0D3HI19_9ORYZ; Uncharacterized protein
STRINGOBART11G02570.11e-109(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-24scarecrow-like 3